Detailed information NTG0882041

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ52_RS17870
• Genome accession: NZ_CP134594
• Coordinates: 3543349..3544209 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3538349..3549209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ52_RS17850 (RKQ52_17865)	secG	3538953..3539282 (-)	330	WP_000555572.1	preprotein translocase subunit SecG	-
RKQ52_RS17855 (RKQ52_17870)	tpiA	3539295..3540089 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ52_RS17860 (RKQ52_17875)	pilB	3540381..3542093 (+)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ52_RS17865 (RKQ52_17880)	pilC	3542123..3543349 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
RKQ52_RS17870 (RKQ52_17885)	pilD	3543349..3544209 (+)	861	WP_001152285.1	A24 family peptidase	Machinery gene
RKQ52_RS17875 (RKQ52_17890)	coaE	3544211..3544807 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RKQ52_RS17880 (RKQ52_17895)	-	3544804..3545718 (-)	915	WP_000075011.1	DMT family transporter	-
RKQ52_RS17885 (RKQ52_17900)	rlmB	3545754..3546503 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ52_RS17890 (RKQ52_17905)	-	3546605..3546931 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ52_RS17895 (RKQ52_17910)	-	3547008..3548318 (-)	1311	WP_000753294.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=882041 RKQ52_RS17870 WP_001152285.1 3543349..3544209(+) (pilD) [Acinetobacter baumannii strain XH1019]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=882041 RKQ52_RS17870 WP_001152285.1 3543349..3544209(+) (pilD) [Acinetobacter baumannii strain XH1019]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448