Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RKQ55_RS16755 Genome accession   NZ_CP134586
Coordinates   3516666..3518087 (+) Length   473 a.a.
NCBI ID   WP_005129880.1    Uniprot ID   A0A9E9MEA0
Organism   Acinetobacter baumannii strain XH1026     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511666..3523087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS16735 (RKQ55_16775) thrC 3511922..3513061 (+) 1140 WP_000063593.1 threonine synthase -
  RKQ55_RS16740 (RKQ55_16780) pbpG 3513169..3514215 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RKQ55_RS16745 (RKQ55_16785) - 3514428..3515063 (+) 636 WP_000633799.1 response regulator -
  RKQ55_RS16750 (RKQ55_16790) pilS 3515074..3516642 (+) 1569 WP_005129877.1 PAS domain-containing sensor histidine kinase Regulator
  RKQ55_RS16755 (RKQ55_16795) pilR 3516666..3518087 (+) 1422 WP_005129880.1 sigma-54 dependent transcriptional regulator Regulator
  RKQ55_RS16760 (RKQ55_16800) - 3518091..3519275 (-) 1185 WP_000939107.1 S41 family peptidase -
  RKQ55_RS16765 (RKQ55_16805) gpmI 3519291..3520838 (-) 1548 WP_005129881.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  RKQ55_RS16770 (RKQ55_16810) lptG 3520964..3522034 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53041.26 Da        Isoelectric Point: 6.9050

>NTDB_id=881903 RKQ55_RS16755 WP_005129880.1 3516666..3518087(+) (pilR) [Acinetobacter baumannii strain XH1026]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMDWETPPKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDVSHLHPAPLRANIYNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=881903 RKQ55_RS16755 WP_005129880.1 3516666..3518087(+) (pilR) [Acinetobacter baumannii strain XH1026]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACCGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAACTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTAGCCAATCACTTTATTCAGAAAATTTGTATGGATTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACGATAGATGTATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTATAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCCCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.097

100

0.981
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497