Detailed information NTG0881899

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ55_RS16300
• Genome accession: NZ_CP134586
• Coordinates: 3423371..3424231 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain XH1026
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3418371..3429231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ55_RS16280 (RKQ55_16315)	secG	3418976..3419305 (-)	330	WP_005129832.1	preprotein translocase subunit SecG	-
RKQ55_RS16285 (RKQ55_16320)	tpiA	3419318..3420112 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ55_RS16290 (RKQ55_16325)	pilB	3420403..3422115 (+)	1713	WP_001274984.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ55_RS16295 (RKQ55_16330)	pilC	3422145..3423371 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
RKQ55_RS16300 (RKQ55_16335)	pilD	3423371..3424231 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
RKQ55_RS16305 (RKQ55_16340)	coaE	3424233..3424829 (+)	597	WP_030423659.1	dephospho-CoA kinase	-
RKQ55_RS16310 (RKQ55_16345)	-	3424826..3425740 (-)	915	WP_394253774.1	DMT family transporter	-
RKQ55_RS16315 (RKQ55_16350)	rlmB	3425776..3426525 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ55_RS16320 (RKQ55_16355)	-	3426627..3426953 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ55_RS16325 (RKQ55_16360)	-	3427030..3428340 (-)	1311	WP_005129836.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=881899 RKQ55_RS16300 WP_001152273.1 3423371..3424231(+) (pilD) [Acinetobacter baumannii strain XH1026]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=881899 RKQ55_RS16300 WP_001152273.1 3423371..3424231(+) (pilD) [Acinetobacter baumannii strain XH1026]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441