Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RKQ55_RS09710 Genome accession   NZ_CP134586
Coordinates   2060677..2061057 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055677..2066057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS09680 (RKQ55_09715) tadA 2055796..2056299 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  RKQ55_RS09685 (RKQ55_09720) - 2056306..2057430 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RKQ55_RS09690 (RKQ55_09725) ung 2057427..2058140 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  RKQ55_RS09695 (RKQ55_09730) - 2058191..2058787 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  RKQ55_RS09700 (RKQ55_09735) gspK 2059017..2059976 (-) 960 WP_005128789.1 type II secretion system minor pseudopilin GspK -
  RKQ55_RS09705 (RKQ55_09740) xcpW 2059976..2060677 (-) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RKQ55_RS09710 (RKQ55_09745) xcpV 2060677..2061057 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  RKQ55_RS09715 (RKQ55_09750) - 2061047..2061601 (-) 555 WP_005128793.1 type II secretion system protein -
  RKQ55_RS09720 (RKQ55_09755) - 2061611..2062219 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RKQ55_RS09725 (RKQ55_09760) - 2062257..2063030 (-) 774 WP_000497302.1 TatD family hydrolase -
  RKQ55_RS09730 (RKQ55_09765) - 2063048..2063389 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  RKQ55_RS09735 (RKQ55_09770) - 2063401..2064381 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RKQ55_RS09740 (RKQ55_09775) kdsB 2064393..2065154 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=881883 RKQ55_RS09710 WP_000836911.1 2060677..2061057(-) (xcpV) [Acinetobacter baumannii strain XH1026]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=881883 RKQ55_RS09710 WP_000836911.1 2060677..2061057(-) (xcpV) [Acinetobacter baumannii strain XH1026]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1