NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	RKQ55_RS09705	Genome accession	NZ_CP134586
Coordinates	2059976..2060677 (-)	Length	233 a.a.
NCBI ID	WP_004747380.1	Uniprot ID	A0A9E9PDK8
Organism	Acinetobacter baumannii strain XH1026
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2054976..2065677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ55_RS09675 (RKQ55_09710)	-	2055283..2055726 (-)	444	WP_001246675.1	SRPBCC family protein	-
RKQ55_RS09680 (RKQ55_09715)	tadA	2055796..2056299 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RKQ55_RS09685 (RKQ55_09720)	-	2056306..2057430 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ55_RS09690 (RKQ55_09725)	ung	2057427..2058140 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
RKQ55_RS09695 (RKQ55_09730)	-	2058191..2058787 (-)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
RKQ55_RS09700 (RKQ55_09735)	gspK	2059017..2059976 (-)	960	WP_005128789.1	type II secretion system minor pseudopilin GspK	-
RKQ55_RS09705 (RKQ55_09740)	xcpW	2059976..2060677 (-)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ55_RS09710 (RKQ55_09745)	xcpV	2060677..2061057 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ55_RS09715 (RKQ55_09750)	-	2061047..2061601 (-)	555	WP_005128793.1	type II secretion system protein	-
RKQ55_RS09720 (RKQ55_09755)	-	2061611..2062219 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ55_RS09725 (RKQ55_09760)	-	2062257..2063030 (-)	774	WP_000497302.1	TatD family hydrolase	-
RKQ55_RS09730 (RKQ55_09765)	-	2063048..2063389 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
RKQ55_RS09735 (RKQ55_09770)	-	2063401..2064381 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
RKQ55_RS09740 (RKQ55_09775)	kdsB	2064393..2065154 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26629.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=881882 RKQ55_RS09705 WP_004747380.1 2059976..2060677(-) (xcpW) [Acinetobacter baumannii strain XH1026]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=881882 RKQ55_RS09705 WP_004747380.1 2059976..2060677(-) (xcpW) [Acinetobacter baumannii strain XH1026]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0881882