Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RKQ55_RS02115 Genome accession   NZ_CP134586
Coordinates   454923..455558 (-) Length   211 a.a.
NCBI ID   WP_031993739.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449923..460558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS02080 (RKQ55_02085) mlaE 450259..451035 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RKQ55_RS02085 (RKQ55_02090) - 451035..451715 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RKQ55_RS02090 (RKQ55_02095) - 451742..452383 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RKQ55_RS02095 (RKQ55_02100) - 452395..452682 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RKQ55_RS02100 (RKQ55_02105) - 452752..453765 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RKQ55_RS02105 (RKQ55_02110) - 453923..454504 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  RKQ55_RS02110 (RKQ55_02115) - 454519..454920 (+) 402 WP_000849705.1 NUDIX domain-containing protein -
  RKQ55_RS02115 (RKQ55_02120) comF 454923..455558 (-) 636 WP_031993739.1 ComF family protein Machinery gene
  RKQ55_RS02120 (RKQ55_02125) recG 455551..457596 (-) 2046 WP_079549012.1 ATP-dependent DNA helicase RecG -
  RKQ55_RS02125 (RKQ55_02130) - 457617..458432 (+) 816 WP_033851778.1 NAD(P)H-binding protein -
  RKQ55_RS02130 (RKQ55_02135) adeT2 458512..459498 (+) 987 WP_002058258.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24560.68 Da        Isoelectric Point: 9.7140

>NTDB_id=881874 RKQ55_RS02115 WP_031993739.1 454923..455558(-) (comF) [Acinetobacter baumannii strain XH1026]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLHQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=881874 RKQ55_RS02115 WP_031993739.1 454923..455558(-) (comF) [Acinetobacter baumannii strain XH1026]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAATCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACACCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981