Detailed information NTG0881851

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ56_RS17300
• Genome accession: NZ_CP134583
• Coordinates: 3574754..3575614 (+)
• Length: 286 a.a.
• NCBI ID: WP_032031408.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1032
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3569754..3580614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ56_RS17280 (RKQ56_17305)	secG	3570359..3570688 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RKQ56_RS17285 (RKQ56_17310)	tpiA	3570701..3571495 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
RKQ56_RS17290 (RKQ56_17315)	pilB	3571786..3573498 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ56_RS17295 (RKQ56_17320)	pilC	3573528..3574754 (+)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
RKQ56_RS17300 (RKQ56_17325)	pilD	3574754..3575614 (+)	861	WP_032031408.1	A24 family peptidase	Machinery gene
RKQ56_RS17305 (RKQ56_17330)	coaE	3575616..3576212 (+)	597	WP_032010096.1	dephospho-CoA kinase	-
RKQ56_RS17310 (RKQ56_17335)	-	3576209..3577123 (-)	915	WP_000075015.1	DMT family transporter	-
RKQ56_RS17315 (RKQ56_17340)	rlmB	3577159..3577908 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ56_RS17320 (RKQ56_17345)	-	3578010..3578336 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ56_RS17325 (RKQ56_17350)	-	3578413..3579723 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32098.50 Da
• Isoelectric Point: 6.8106

>NTDB_id=881851 RKQ56_RS17300 WP_032031408.1 3574754..3575614(+) (pilD) [Acinetobacter baumannii strain XH1032]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKIMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQQ
IHWYQNIPVISWLVLRGKCGHCQHPISIRYLAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=881851 RKQ56_RS17300 WP_032031408.1 3574754..3575614(+) (pilD) [Acinetobacter baumannii strain XH1032]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATAATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACAG
ATCCATTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCACTGCCAGCACCCAATCAG
TATTCGCTATCTAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	97.552	100	0.976
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	46.212	92.308	0.427