Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RKQ56_RS10035 Genome accession   NZ_CP134583
Coordinates   2106861..2107241 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101861..2112241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS10005 (RKQ56_10010) tadA 2101980..2102483 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  RKQ56_RS10010 (RKQ56_10015) - 2102490..2103614 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RKQ56_RS10015 (RKQ56_10020) ung 2103611..2104324 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  RKQ56_RS10020 (RKQ56_10025) - 2104375..2104971 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  RKQ56_RS10025 (RKQ56_10030) gspK 2105201..2106160 (-) 960 WP_032030217.1 type II secretion system minor pseudopilin GspK -
  RKQ56_RS10030 (RKQ56_10035) xcpW 2106160..2106861 (-) 702 WP_032030215.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RKQ56_RS10035 (RKQ56_10040) xcpV 2106861..2107241 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  RKQ56_RS10040 (RKQ56_10045) - 2107231..2107785 (-) 555 WP_000841373.1 type II secretion system protein -
  RKQ56_RS10045 (RKQ56_10050) - 2107795..2108403 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RKQ56_RS10050 (RKQ56_10055) - 2108441..2109214 (-) 774 WP_000497298.1 TatD family hydrolase -
  RKQ56_RS10055 (RKQ56_10060) - 2109232..2109573 (-) 342 WP_032030213.1 PilZ domain-containing protein -
  RKQ56_RS10060 (RKQ56_10065) - 2109585..2110565 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  RKQ56_RS10065 (RKQ56_10070) kdsB 2110577..2111338 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=881836 RKQ56_RS10035 WP_000836911.1 2106861..2107241(-) (xcpV) [Acinetobacter baumannii strain XH1032]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=881836 RKQ56_RS10035 WP_000836911.1 2106861..2107241(-) (xcpV) [Acinetobacter baumannii strain XH1032]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1