Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ56_RS01550 Genome accession   NZ_CP134583
Coordinates   334713..335186 (+) Length   157 a.a.
NCBI ID   WP_032030052.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329713..340186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS01525 (RKQ56_01530) - 330176..332281 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ56_RS01530 (RKQ56_01535) - 332321..332451 (-) 131 Protein_292 hypothetical protein -
  RKQ56_RS01535 (RKQ56_01540) rpoZ 332490..332768 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ56_RS01540 (RKQ56_01545) gmk 332841..333470 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ56_RS01545 (RKQ56_01550) ispH 333593..334543 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ56_RS01550 (RKQ56_01555) fimU 334713..335186 (+) 474 WP_032030052.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ56_RS01555 (RKQ56_01560) pilV 335180..335740 (+) 561 WP_086266985.1 type IV pilus modification protein PilV Machinery gene
  RKQ56_RS01560 (RKQ56_01565) pilW 335741..336742 (+) 1002 WP_032030055.1 PilW family protein Machinery gene
  RKQ56_RS01565 (RKQ56_01570) pilX 336739..337557 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16894.53 Da        Isoelectric Point: 9.3085

>NTDB_id=881820 RKQ56_RS01550 WP_032030052.1 334713..335186(+) (fimU) [Acinetobacter baumannii strain XH1032]
MRGIIPQEGFTLVELMVTIAVMAIITLMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGKQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881820 RKQ56_RS01550 WP_032030052.1 334713..335186(+) (fimU) [Acinetobacter baumannii strain XH1032]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTACACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTAAGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987