Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RKQ56_RS01560 Genome accession   NZ_CP134583
Coordinates   335741..336742 (+) Length   333 a.a.
NCBI ID   WP_032030055.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330741..341742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS01530 (RKQ56_01535) - 332321..332451 (-) 131 Protein_292 hypothetical protein -
  RKQ56_RS01535 (RKQ56_01540) rpoZ 332490..332768 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ56_RS01540 (RKQ56_01545) gmk 332841..333470 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ56_RS01545 (RKQ56_01550) ispH 333593..334543 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ56_RS01550 (RKQ56_01555) fimU 334713..335186 (+) 474 WP_032030052.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ56_RS01555 (RKQ56_01560) pilV 335180..335740 (+) 561 WP_086266985.1 type IV pilus modification protein PilV Machinery gene
  RKQ56_RS01560 (RKQ56_01565) pilW 335741..336742 (+) 1002 WP_032030055.1 PilW family protein Machinery gene
  RKQ56_RS01565 (RKQ56_01570) pilX 336739..337557 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ56_RS01570 (RKQ56_01575) pilY1 337569..341423 (+) 3855 WP_032030056.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35831.55 Da        Isoelectric Point: 6.1010

>NTDB_id=881822 RKQ56_RS01560 WP_032030055.1 335741..336742(+) (pilW) [Acinetobacter baumannii strain XH1032]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKVIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=881822 RKQ56_RS01560 WP_032030055.1 335741..336742(+) (pilW) [Acinetobacter baumannii strain XH1032]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGTAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997