Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RKQ58_RS02930 Genome accession   NZ_CP134579
Coordinates   415488..416123 (-) Length   211 a.a.
NCBI ID   WP_196432041.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410488..421123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02895 (RKQ58_02895) mlaE 410824..411600 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RKQ58_RS02900 (RKQ58_02900) - 411600..412280 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RKQ58_RS02905 (RKQ58_02905) - 412307..412948 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  RKQ58_RS02910 (RKQ58_02910) - 412960..413247 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RKQ58_RS02915 (RKQ58_02915) - 413317..414330 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RKQ58_RS02920 (RKQ58_02920) - 414488..415069 (+) 582 WP_196432042.1 TIGR00730 family Rossman fold protein -
  RKQ58_RS02925 (RKQ58_02925) - 415084..415485 (+) 402 WP_111811139.1 NUDIX domain-containing protein -
  RKQ58_RS02930 (RKQ58_02930) comF 415488..416123 (-) 636 WP_196432041.1 ComF family protein Machinery gene
  RKQ58_RS02935 (RKQ58_02935) recG 416116..418161 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  RKQ58_RS02940 (RKQ58_02940) - 418182..418997 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  RKQ58_RS02945 (RKQ58_02945) adeT2 419077..420063 (+) 987 WP_196432047.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24581.73 Da        Isoelectric Point: 9.7140

>NTDB_id=881733 RKQ58_RS02930 WP_196432041.1 415488..416123(-) (comF) [Acinetobacter baumannii strain XH1034]
MFKFLNLQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=881733 RKQ58_RS02930 WP_196432041.1 415488..416123(-) (comF) [Acinetobacter baumannii strain XH1034]
ATGTTTAAGTTTTTAAACCTACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCTTTATTACTCGCTAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986