Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ58_RS02550 Genome accession   NZ_CP134579
Coordinates   340584..341012 (+) Length   142 a.a.
NCBI ID   WP_391485003.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 339272..340480 340584..341012 flank 104


Gene organization within MGE regions


Location: 339272..341012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02545 (RKQ58_02545) - 339272..340480 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  RKQ58_RS02550 (RKQ58_02550) pilY2 340584..341012 (+) 429 WP_391485003.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15468.53 Da        Isoelectric Point: 9.3373

>NTDB_id=881732 RKQ58_RS02550 WP_391485003.1 340584..341012(+) (pilY2) [Acinetobacter baumannii strain XH1034]
MVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAASVILPVGATGDAVKYQITIR
DGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 429 bp        

>NTDB_id=881732 RKQ58_RS02550 WP_391485003.1 340584..341012(+) (pilY2) [Acinetobacter baumannii strain XH1034]
ATGGTTGTGGTGGTGATTGTTGCTATTTTTGCGGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGC
TTCGCGCGCAGAACAGGAAATCCAGAAAATTTCCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTT
TTTCTACAGGTGCTGCTGCGTCAGTAATTTTGCCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGA
GATGGTGATGATACTTCGAAACCTTTAACAGATCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGA
TCCTTATAATTTTACTTATTTATTTAGTAGTAATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAA
CTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(16-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46

100

0.486
  comE Acinetobacter baylyi ADP1

36.806

100

0.373