Detailed information NTG0881706

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AABD46_RS10605
• Genome accession: NZ_CP150947
• Coordinates: 2324103..2325383 (-)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain vp-HL-202212
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2319103..2330383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD46_RS10595 (AABD46_10595)	-	2321154..2321426 (-)	273	WP_005382341.1	HU family DNA-binding protein	-
AABD46_RS10600 (AABD46_10600)	lon	2321620..2323971 (-)	2352	WP_140103112.1	endopeptidase La	-
AABD46_RS10605 (AABD46_10605)	clpX	2324103..2325383 (-)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
AABD46_RS10610 (AABD46_10610)	clpP	2325455..2326081 (-)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AABD46_RS10615 (AABD46_10615)	tig	2326187..2327491 (-)	1305	WP_005460612.1	trigger factor	-
AABD46_RS10620 (AABD46_10620)	-	2327785..2327970 (-)	186	WP_005482581.1	hypothetical protein	-
AABD46_RS10625 (AABD46_10625)	-	2328017..2329819 (+)	1803	WP_140103111.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=881706 AABD46_RS10605 WP_005460618.1 2324103..2325383(-) (clpX) [Vibrio parahaemolyticus strain vp-HL-202212]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=881706 AABD46_RS10605 WP_005460618.1 2324103..2325383(-) (clpX) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACGC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAGGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCTCGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAGGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTGCAAGTG
GACACGTCTAAGATCCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTTGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGAGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516