Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RKQ62_RS09955 Genome accession   NZ_CP134566
Coordinates   2065942..2066322 (-) Length   126 a.a.
NCBI ID   WP_000836906.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1038     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2060942..2071322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS09925 (RKQ62_09970) tadA 2061061..2061564 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  RKQ62_RS09930 (RKQ62_09975) - 2061571..2062695 (-) 1125 WP_086384405.1 enoyl-CoA hydratase/isomerase family protein -
  RKQ62_RS09935 (RKQ62_09980) ung 2062692..2063405 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  RKQ62_RS09940 (RKQ62_09985) - 2063456..2064052 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  RKQ62_RS09945 (RKQ62_09990) gspK 2064282..2065241 (-) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  RKQ62_RS09950 (RKQ62_09995) xcpW 2065241..2065942 (-) 702 WP_000594587.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RKQ62_RS09955 (RKQ62_10000) xcpV 2065942..2066322 (-) 381 WP_000836906.1 type II secretion system minor pseudopilin GspI Machinery gene
  RKQ62_RS09960 (RKQ62_10005) - 2066312..2066866 (-) 555 WP_391485195.1 type II secretion system protein -
  RKQ62_RS09965 (RKQ62_10010) - 2066876..2067484 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RKQ62_RS09970 (RKQ62_10015) - 2067522..2068295 (-) 774 WP_000497295.1 TatD family hydrolase -
  RKQ62_RS09975 (RKQ62_10020) - 2068313..2068654 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  RKQ62_RS09980 (RKQ62_10025) - 2068666..2069646 (-) 981 WP_001075420.1 DNA polymerase III subunit delta' -
  RKQ62_RS09985 (RKQ62_10030) kdsB 2069658..2070419 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13984.21 Da        Isoelectric Point: 9.8006

>NTDB_id=881562 RKQ62_RS09955 WP_000836906.1 2065942..2066322(-) (xcpV) [Acinetobacter baumannii strain XH1038]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTHSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=881562 RKQ62_RS09955 WP_000836906.1 2065942..2066322(-) (xcpV) [Acinetobacter baumannii strain XH1038]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCACTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCGGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992