NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	RKQ62_RS09950	Genome accession	NZ_CP134566
Coordinates	2065241..2065942 (-)	Length	233 a.a.
NCBI ID	WP_000594587.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain XH1038
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2060241..2070942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ62_RS09920 (RKQ62_09965)	-	2060548..2060991 (-)	444	WP_001246675.1	SRPBCC family protein	-
RKQ62_RS09925 (RKQ62_09970)	tadA	2061061..2061564 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RKQ62_RS09930 (RKQ62_09975)	-	2061571..2062695 (-)	1125	WP_086384405.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ62_RS09935 (RKQ62_09980)	ung	2062692..2063405 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
RKQ62_RS09940 (RKQ62_09985)	-	2063456..2064052 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
RKQ62_RS09945 (RKQ62_09990)	gspK	2064282..2065241 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
RKQ62_RS09950 (RKQ62_09995)	xcpW	2065241..2065942 (-)	702	WP_000594587.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ62_RS09955 (RKQ62_10000)	xcpV	2065942..2066322 (-)	381	WP_000836906.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ62_RS09960 (RKQ62_10005)	-	2066312..2066866 (-)	555	WP_391485195.1	type II secretion system protein	-
RKQ62_RS09965 (RKQ62_10010)	-	2066876..2067484 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ62_RS09970 (RKQ62_10015)	-	2067522..2068295 (-)	774	WP_000497295.1	TatD family hydrolase	-
RKQ62_RS09975 (RKQ62_10020)	-	2068313..2068654 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
RKQ62_RS09980 (RKQ62_10025)	-	2068666..2069646 (-)	981	WP_001075420.1	DNA polymerase III subunit delta'	-
RKQ62_RS09985 (RKQ62_10030)	kdsB	2069658..2070419 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26681.66 Da Isoelectric Point: 9.3468

                                >NTDB_id=881561 RKQ62_RS09950 WP_000594587.1 2065241..2065942(-) (xcpW) [Acinetobacter baumannii strain XH1038]

MIKNKYIHIRSIASRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQDDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=881561 RKQ62_RS09950 WP_000594587.1 2065241..2065942(-) (xcpW) [Acinetobacter baumannii strain XH1038]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGATGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0881561