Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RKQ62_RS01980 Genome accession   NZ_CP134566
Coordinates   416212..416847 (-) Length   211 a.a.
NCBI ID   WP_000472267.1    Uniprot ID   N9K0C6
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411212..421847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS01945 (RKQ62_01955) mlaE 411548..412324 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RKQ62_RS01950 (RKQ62_01960) - 412324..413004 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RKQ62_RS01955 (RKQ62_01965) - 413031..413672 (+) 642 WP_002058237.1 phospholipid-binding protein MlaC -
  RKQ62_RS01960 (RKQ62_01970) - 413684..413971 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  RKQ62_RS01965 (RKQ62_01975) - 414041..415054 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  RKQ62_RS01970 (RKQ62_01980) - 415212..415793 (+) 582 WP_002058225.1 TIGR00730 family Rossman fold protein -
  RKQ62_RS01975 (RKQ62_01985) - 415808..416209 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  RKQ62_RS01980 (RKQ62_01990) comF 416212..416847 (-) 636 WP_000472267.1 ComF family protein Machinery gene
  RKQ62_RS01985 (RKQ62_01995) recG 416840..418885 (-) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  RKQ62_RS01990 (RKQ62_02000) - 418906..419721 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  RKQ62_RS01995 (RKQ62_02005) adeT2 419801..420787 (+) 987 WP_002058258.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.77 Da        Isoelectric Point: 9.8358

>NTDB_id=881553 RKQ62_RS01980 WP_000472267.1 416212..416847(-) (comF) [Acinetobacter baumannii strain XH1038]
MFKFLNPQYLFQLLSPCLLCEIGKREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=881553 RKQ62_RS01980 WP_000472267.1 416212..416847(-) (comF) [Acinetobacter baumannii strain XH1038]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAAAACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAACAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K0C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986