Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ64_RS03135 Genome accession   NZ_CP134564
Coordinates   562029..562847 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557029..567847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ64_RS03100 (RKQ64_03100) - 557612..557741 (-) 130 Protein_501 hypothetical protein -
  RKQ64_RS03105 (RKQ64_03105) rpoZ 557780..558058 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ64_RS03110 (RKQ64_03110) gmk 558131..558760 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ64_RS03115 (RKQ64_03115) ispH 558883..559833 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ64_RS03120 (RKQ64_03120) fimU 560003..560476 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ64_RS03125 (RKQ64_03125) pilV 560470..561030 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKQ64_RS03130 (RKQ64_03130) pilW 561031..562032 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKQ64_RS03135 (RKQ64_03135) pilX 562029..562847 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ64_RS03140 (RKQ64_03140) pilY1 562859..566713 (+) 3855 WP_020752638.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ64_RS03145 (RKQ64_03145) pilY2 566726..567208 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  RKQ64_RS03150 (RKQ64_03150) pilE 567205..567630 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=881464 RKQ64_RS03135 WP_000149374.1 562029..562847(+) (pilX) [Acinetobacter baumannii strain XH1040]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881464 RKQ64_RS03135 WP_000149374.1 562029..562847(+) (pilX) [Acinetobacter baumannii strain XH1040]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993