Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RKQ64_RS03125 Genome accession   NZ_CP134564
Coordinates   560470..561030 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555470..566030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ64_RS03100 (RKQ64_03100) - 557612..557741 (-) 130 Protein_501 hypothetical protein -
  RKQ64_RS03105 (RKQ64_03105) rpoZ 557780..558058 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ64_RS03110 (RKQ64_03110) gmk 558131..558760 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ64_RS03115 (RKQ64_03115) ispH 558883..559833 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ64_RS03120 (RKQ64_03120) fimU 560003..560476 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ64_RS03125 (RKQ64_03125) pilV 560470..561030 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  RKQ64_RS03130 (RKQ64_03130) pilW 561031..562032 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  RKQ64_RS03135 (RKQ64_03135) pilX 562029..562847 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=881462 RKQ64_RS03125 WP_085916952.1 560470..561030(+) (pilV) [Acinetobacter baumannii strain XH1040]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=881462 RKQ64_RS03125 WP_085916952.1 560470..561030(+) (pilV) [Acinetobacter baumannii strain XH1040]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409