Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RKQ65_RS18535 Genome accession   NZ_CP134562
Coordinates   3758027..3758509 (-) Length   160 a.a.
NCBI ID   WP_020753490.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3753027..3763509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS18500 (RKQ65_18550) - 3753135..3754169 (+) 1035 WP_001189446.1 lipase secretion chaperone -
  RKQ65_RS18505 (RKQ65_18555) - 3754284..3755225 (+) 942 WP_085916958.1 triacylglycerol lipase -
  RKQ65_RS18510 (RKQ65_18560) rplS 3755277..3755645 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RKQ65_RS18515 (RKQ65_18565) trmD 3755853..3756593 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RKQ65_RS18520 (RKQ65_18570) rimM 3756639..3757187 (-) 549 WP_020753489.1 ribosome maturation factor RimM -
  RKQ65_RS18525 (RKQ65_18575) rpsP 3757207..3757458 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ65_RS18530 (RKQ65_18580) pilE 3757605..3758030 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RKQ65_RS18535 (RKQ65_18585) pilY2 3758027..3758509 (-) 483 WP_020753490.1 type IV pilin protein Machinery gene
  RKQ65_RS18540 (RKQ65_18590) pilY1 3758522..3762376 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  RKQ65_RS18545 (RKQ65_18595) pilX 3762388..3763206 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17593.81 Da        Isoelectric Point: 8.4834

>NTDB_id=881437 RKQ65_RS18535 WP_020753490.1 3758027..3758509(-) (pilY2) [Acinetobacter baumannii strain XH1041]
MNKYSILRFNQGVTLIELMVVIVIVAIFTSIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=881437 RKQ65_RS18535 WP_020753490.1 3758027..3758509(-) (pilY2) [Acinetobacter baumannii strain XH1041]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTACTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.372

100

0.412