Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RKQ65_RS09500 Genome accession   NZ_CP134562
Coordinates   1925289..1925669 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1041     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1920289..1930669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS09470 (RKQ65_09460) kdsB 1921192..1921953 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RKQ65_RS09475 (RKQ65_09465) - 1921965..1922945 (+) 981 WP_038346636.1 DNA polymerase III subunit delta' -
  RKQ65_RS09480 (RKQ65_09470) - 1922957..1923298 (+) 342 WP_020753088.1 PilZ domain-containing protein -
  RKQ65_RS09485 (RKQ65_09475) - 1923316..1924089 (+) 774 WP_000497298.1 TatD family hydrolase -
  RKQ65_RS09490 (RKQ65_09480) - 1924127..1924735 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RKQ65_RS09495 (RKQ65_09485) - 1924745..1925299 (+) 555 WP_000841373.1 type II secretion system protein -
  RKQ65_RS09500 (RKQ65_09490) xcpV 1925289..1925669 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  RKQ65_RS09505 (RKQ65_09495) xcpW 1925669..1926370 (+) 702 WP_020753089.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RKQ65_RS09510 (RKQ65_09500) gspK 1926370..1927329 (+) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  RKQ65_RS09515 (RKQ65_09505) - 1927559..1928155 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  RKQ65_RS09520 (RKQ65_09510) ung 1928206..1928919 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  RKQ65_RS09525 (RKQ65_09515) - 1928916..1930040 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  RKQ65_RS09530 (RKQ65_09520) tadA 1930047..1930550 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=881426 RKQ65_RS09500 WP_000836911.1 1925289..1925669(+) (xcpV) [Acinetobacter baumannii strain XH1041]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=881426 RKQ65_RS09500 WP_000836911.1 1925289..1925669(+) (xcpV) [Acinetobacter baumannii strain XH1041]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1