Detailed information NTG0881427

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RKQ65_RS09505
• Genome accession: NZ_CP134562
• Coordinates: 1925669..1926370 (+)
• Length: 233 a.a.
• NCBI ID: WP_020753089.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1041
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1920669..1931370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ65_RS09470 (RKQ65_09460)	kdsB	1921192..1921953 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RKQ65_RS09475 (RKQ65_09465)	-	1921965..1922945 (+)	981	WP_038346636.1	DNA polymerase III subunit delta'	-
RKQ65_RS09480 (RKQ65_09470)	-	1922957..1923298 (+)	342	WP_020753088.1	PilZ domain-containing protein	-
RKQ65_RS09485 (RKQ65_09475)	-	1923316..1924089 (+)	774	WP_000497298.1	TatD family hydrolase	-
RKQ65_RS09490 (RKQ65_09480)	-	1924127..1924735 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ65_RS09495 (RKQ65_09485)	-	1924745..1925299 (+)	555	WP_000841373.1	type II secretion system protein	-
RKQ65_RS09500 (RKQ65_09490)	xcpV	1925289..1925669 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ65_RS09505 (RKQ65_09495)	xcpW	1925669..1926370 (+)	702	WP_020753089.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ65_RS09510 (RKQ65_09500)	gspK	1926370..1927329 (+)	960	WP_001218621.1	type II secretion system minor pseudopilin GspK	-
RKQ65_RS09515 (RKQ65_09505)	-	1927559..1928155 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
RKQ65_RS09520 (RKQ65_09510)	ung	1928206..1928919 (+)	714	WP_001177527.1	uracil-DNA glycosylase	-
RKQ65_RS09525 (RKQ65_09515)	-	1928916..1930040 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ65_RS09530 (RKQ65_09520)	tadA	1930047..1930550 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
RKQ65_RS09535 (RKQ65_09525)	-	1930620..1931063 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26599.56 Da
• Isoelectric Point: 9.5501

>NTDB_id=881427 RKQ65_RS09505 WP_020753089.1 1925669..1926370(+) (xcpW) [Acinetobacter baumannii strain XH1041]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide

• Length: 702 bp

>NTDB_id=881427 RKQ65_RS09505 WP_020753089.1 1925669..1926370(+) (xcpW) [Acinetobacter baumannii strain XH1041]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987