Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RKQ68_RS16620 Genome accession   NZ_CP134555
Coordinates   3418187..3419608 (+) Length   473 a.a.
NCBI ID   WP_031984931.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1044     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3413187..3424608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS16600 (RKQ68_16610) thrC 3413444..3414583 (+) 1140 WP_000063593.1 threonine synthase -
  RKQ68_RS16605 (RKQ68_16615) pbpG 3414690..3415736 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RKQ68_RS16610 (RKQ68_16620) - 3415949..3416584 (+) 636 WP_000633799.1 response regulator -
  RKQ68_RS16615 (RKQ68_16625) pilS 3416595..3418163 (+) 1569 WP_032014308.1 PAS domain-containing sensor histidine kinase Regulator
  RKQ68_RS16620 (RKQ68_16630) pilR 3418187..3419608 (+) 1422 WP_031984931.1 sigma-54 dependent transcriptional regulator Regulator
  RKQ68_RS16625 (RKQ68_16635) - 3419612..3420796 (-) 1185 WP_000939109.1 S41 family peptidase -
  RKQ68_RS16630 (RKQ68_16640) gpmI 3420812..3422359 (-) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  RKQ68_RS16635 (RKQ68_16645) lptG 3422485..3423555 (-) 1071 WP_017897077.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53089.31 Da        Isoelectric Point: 6.5588

>NTDB_id=881303 RKQ68_RS16620 WP_031984931.1 3418187..3419608(+) (pilR) [Acinetobacter baumannii strain XH1044]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSVLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDFAESALENKLLIGCSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDILL
LANHFIQKICMEWETSPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDTTIDISHLHPAPLRANISNPFASAAQN
IQTTVAAPQVVKKLPSEGLERYLENIEKDILINALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=881303 RKQ68_RS16620 WP_031984931.1 3418187..3419608(+) (pilR) [Acinetobacter baumannii strain XH1044]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGTGTTAGACTTAGTCAAACATGTCTCTCAAAATTATCCCAACACTCCGATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTTGTTCTCTGCCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCGCCTCTACGTGAACGTGGCGAAGATATCCTTTTA
CTTGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACATCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACA
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGCTTCAGCTGCTCAAAAC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTAATCAATGCTCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGATTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

97.674

100

0.977
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497