Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RKQ70_RS01580 Genome accession   NZ_CP134552
Coordinates   338409..339227 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333409..344227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ70_RS01545 (RKQ70_01545) - 333991..334121 (-) 131 Protein_295 hypothetical protein -
  RKQ70_RS01550 (RKQ70_01550) rpoZ 334160..334438 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ70_RS01555 (RKQ70_01555) gmk 334511..335140 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ70_RS01560 (RKQ70_01560) ispH 335263..336213 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ70_RS01565 (RKQ70_01565) fimU 336383..336856 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ70_RS01570 (RKQ70_01570) pilV 336850..337410 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ70_RS01575 (RKQ70_01575) pilW 337411..338412 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ70_RS01580 (RKQ70_01580) pilX 338409..339227 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RKQ70_RS01585 (RKQ70_01585) pilY1 339239..343093 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  RKQ70_RS01590 (RKQ70_01590) pilY2 343104..343586 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  RKQ70_RS01595 (RKQ70_01595) pilE 343583..344008 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=881177 RKQ70_RS01580 WP_000149374.1 338409..339227(+) (pilX) [Acinetobacter baumannii strain XH1047]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=881177 RKQ70_RS01580 WP_000149374.1 338409..339227(+) (pilX) [Acinetobacter baumannii strain XH1047]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993