Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ70_RS01565 Genome accession   NZ_CP134552
Coordinates   336383..336856 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain XH1047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331383..341856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ70_RS01540 (RKQ70_01540) - 331846..333951 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ70_RS01545 (RKQ70_01545) - 333991..334121 (-) 131 Protein_295 hypothetical protein -
  RKQ70_RS01550 (RKQ70_01550) rpoZ 334160..334438 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ70_RS01555 (RKQ70_01555) gmk 334511..335140 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ70_RS01560 (RKQ70_01560) ispH 335263..336213 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ70_RS01565 (RKQ70_01565) fimU 336383..336856 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RKQ70_RS01570 (RKQ70_01570) pilV 336850..337410 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RKQ70_RS01575 (RKQ70_01575) pilW 337411..338412 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  RKQ70_RS01580 (RKQ70_01580) pilX 338409..339227 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=881174 RKQ70_RS01565 WP_001214060.1 336383..336856(+) (fimU) [Acinetobacter baumannii strain XH1047]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=881174 RKQ70_RS01565 WP_001214060.1 336383..336856(+) (fimU) [Acinetobacter baumannii strain XH1047]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987