Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WAF13_RS07295 Genome accession   NZ_CP150882
Coordinates   1544722..1545231 (+) Length   169 a.a.
NCBI ID   WP_003092330.1    Uniprot ID   A0ABN4SQN8
Organism   Pseudomonas aeruginosa strain FI-26059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539722..1550231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAF13_RS07275 (WAF13_07275) - 1539883..1540776 (+) 894 WP_003092335.1 peptidoglycan DD-metalloendopeptidase family protein -
  WAF13_RS07280 (WAF13_07280) rpoS 1540881..1541885 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  WAF13_RS07285 (WAF13_07285) - 1542110..1543309 (+) 1200 WP_001062689.1 site-specific integrase -
  WAF13_RS07290 (WAF13_07290) - 1543306..1544370 (+) 1065 WP_003092331.1 PDDEXK nuclease domain-containing protein -
  WAF13_RS07295 (WAF13_07295) radC 1544722..1545231 (+) 510 WP_003092330.1 DNA repair protein RadC Machinery gene
  WAF13_RS07300 (WAF13_07300) - 1545298..1547601 (-) 2304 WP_006379607.1 AAA family ATPase -
  WAF13_RS07305 (WAF13_07305) - 1548147..1548974 (+) 828 WP_003092327.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18809.45 Da        Isoelectric Point: 6.6978

>NTDB_id=881105 WAF13_RS07295 WP_003092330.1 1544722..1545231(+) (radC) [Pseudomonas aeruginosa strain FI-26059]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMRRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=881105 WAF13_RS07295 WP_003092330.1 1544722..1545231(+) (radC) [Pseudomonas aeruginosa strain FI-26059]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCGGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373