Detailed information NTG0881104

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WAF13_RS07280
• Genome accession: NZ_CP150882
• Coordinates: 1540881..1541885 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FI-26059
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1535881..1546885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAF13_RS07250 (WAF13_07250)	fghA	1535973..1536824 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
WAF13_RS07255 (WAF13_07255)	ispF	1536895..1537368 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WAF13_RS07260 (WAF13_07260)	truD	1537365..1538432 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
WAF13_RS07265 (WAF13_07265)	surE	1538420..1539169 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
WAF13_RS07270 (WAF13_07270)	-	1539202..1539837 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
WAF13_RS07275 (WAF13_07275)	-	1539883..1540776 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
WAF13_RS07280 (WAF13_07280)	rpoS	1540881..1541885 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
WAF13_RS07285 (WAF13_07285)	-	1542110..1543309 (+)	1200	WP_001062689.1	site-specific integrase	-
WAF13_RS07290 (WAF13_07290)	-	1543306..1544370 (+)	1065	WP_003092331.1	PDDEXK nuclease domain-containing protein	-
WAF13_RS07295 (WAF13_07295)	radC	1544722..1545231 (+)	510	WP_003092330.1	DNA repair protein RadC	Machinery gene

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=881104 WAF13_RS07280 WP_003113871.1 1540881..1541885(+) (rpoS) [Pseudomonas aeruginosa strain FI-26059]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=881104 WAF13_RS07280 WP_003113871.1 1540881..1541885(+) (rpoS) [Pseudomonas aeruginosa strain FI-26059]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653