Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B0E36_RS25600 Genome accession   NZ_CP150879
Coordinates   5913811..5914452 (+) Length   213 a.a.
NCBI ID   WP_191890768.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5908811..5919452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS25580 - 5909357..5910115 (-) 759 WP_006143339.1 transglycosylase SLT domain-containing protein -
  B0E36_RS25585 - 5910488..5911765 (-) 1278 WP_234528497.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  B0E36_RS25590 - 5911762..5912463 (-) 702 WP_006143337.1 SDR family NAD(P)-dependent oxidoreductase -
  B0E36_RS25595 - 5912673..5913818 (+) 1146 WP_006143336.1 GAF domain-containing sensor histidine kinase -
  B0E36_RS25600 vraR 5913811..5914452 (+) 642 WP_191890768.1 response regulator transcription factor Regulator
  B0E36_RS25605 - 5914680..5914919 (+) 240 WP_006143334.1 chaplin -
  B0E36_RS25610 - 5915585..5916376 (-) 792 WP_040896840.1 hypothetical protein -
  B0E36_RS25615 - 5916542..5917339 (+) 798 WP_234528496.1 ABC transporter ATP-binding protein -
  B0E36_RS25620 - 5917462..5917896 (+) 435 WP_006143331.1 NfeD family protein -
  B0E36_RS25625 - 5918027..5918986 (+) 960 WP_093598939.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22969.23 Da        Isoelectric Point: 5.3525

>NTDB_id=880988 B0E36_RS25600 WP_191890768.1 5913811..5914452(+) (vraR) [Streptomyces sp. MH191]
MADAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPDVILMDVKMPGVDGIDALRRLRELDHPAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDTGPAQGRAGTLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=880988 B0E36_RS25600 WP_191890768.1 5913811..5914452(+) (vraR) [Streptomyces sp. MH191]
GTGGCTGACGCGATCAGGGTGCTCCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACCTTCCTCGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAGGGCGTCGCCCGGGCCGAGGAACTGCGGCCCGACGTCA
TCCTCATGGACGTCAAGATGCCGGGCGTCGACGGCATCGACGCACTGCGTCGGCTCCGCGAACTGGACCACCCCGCGCGC
GTCCTCGTCGTCACCAGCTTCACCGAACAGCGCACGGTCGTCCCCGCGCTGCGCGCGGGCGCCGCCGGATACGTCTACAA
GGACATCGACCCGGACGCCCTCGCCGGCGCGATCCGCTCCGTGCACGCCGGGCACGTCCTGCTCCAGCCCGAGGTGGCGG
GCGCGCTGCTCGCCCAGGACGACACCGGCCCGGCCCAGGGGAGGGCCGGGACGCTCACCGAGCGGGAGCGGGAGGTGCTC
GGGCTGATCGCCGACGGCCGCTCCAACCGCGAGATCGCCCGCGCACTCGTCCTCTCCGAGAAGACCGTCAAGACGCACGT
CTCGAACATCCTGATGAAACTGGACCTGTCCGACCGCACCCAGGCGGCACTGTGGGCGGTACGGCACGGCGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.755

99.531

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399