Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   B0E36_RS14125 Genome accession   NZ_CP150879
Coordinates   3304982..3306391 (+) Length   469 a.a.
NCBI ID   WP_006142123.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3299982..3311391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS14105 - 3300208..3301059 (-) 852 WP_050811268.1 sugar phosphate isomerase/epimerase -
  B0E36_RS14110 - 3301150..3302079 (-) 930 WP_040896168.1 Ppx/GppA phosphatase family protein -
  B0E36_RS14115 - 3302121..3302990 (+) 870 WP_093597092.1 hypothetical protein -
  B0E36_RS14120 - 3303029..3304753 (-) 1725 WP_349411128.1 hypothetical protein -
  B0E36_RS14125 radA/sms 3304982..3306391 (+) 1410 WP_006142123.1 DNA repair protein RadA Machinery gene
  B0E36_RS14130 disA 3306472..3307596 (+) 1125 WP_191852563.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  B0E36_RS14135 - 3307654..3308499 (-) 846 WP_191891914.1 hypothetical protein -
  B0E36_RS14140 - 3308734..3309720 (+) 987 WP_006142120.1 A/G-specific adenine glycosylase -
  B0E36_RS14145 - 3310096..3310641 (+) 546 WP_040896231.1 SigE family RNA polymerase sigma factor -
  B0E36_RS14150 - 3310629..3311345 (+) 717 WP_206316041.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49804.08 Da        Isoelectric Point: 7.7221

>NTDB_id=880957 B0E36_RS14125 WP_006142123.1 3304982..3306391(+) (radA/sms) [Streptomyces sp. MH191]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTAALPIAEVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAAPEHRTLYVTGEESASQVRMRADRIKALDDHLYLAAETDLAAVL
GHLDEVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGIVGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVTEVQSLTVDSQL
PSPRRTTSGLETSRVSMVLAVLEQRGRISALGKRDIYTATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKIPPGMKVLEVADMGDALRVLPRSRRREAPQEREDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=880957 B0E36_RS14125 WP_006142123.1 3304982..3306391(+) (radA/sms) [Streptomyces sp. MH191]
ATGGCTGCCCGTACCAAAACCGCCAAGGACCGTCCTTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACCGTCGAGGAGTACGGCACGCCCGCCGTCCGCACGACGGCGCCCGGCC
GGGTCACCACCGCCGCCCTGCCCATCGCCGAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTCCCCGAGCTG
GACCGCGTGCTCGGCGGCGGTCTGGTCCCCGGCGCGGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTGCTGGACGTGGCGGCCAAGGCGGCCGCTCCCGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGCATGCGCGCCGACCGCATCAAGGCGCTCGACGACCACCTCTACCTGGCCGCCGAGACCGATCTCGCGGCCGTTCTG
GGCCACTTGGACGAGGTGAAGCCCTCCCTGCTGATCGTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTCATCCGCGCCTCCAAGGAACGCGGCATGGCCACGCTGC
TGGTGGGCCACGTCACGAAGGACGGCGCGATCGCGGGCCCGCGTCTGCTGGAACACCTCGTGGACGTGGTGCTGTCCTTC
GAGGGCGACCGCCACGCCCGGCTCCGTCTCGTACGCGGCGTCAAGAACCGGTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCGTGGGCCTGGCCGACCCCAGCGGCCTGTTCCTCACCCGGCGCGACGAACCGGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCACCGAGGTGCAGTCGCTCACGGTCGACTCCCAGCTC
CCCTCTCCCCGCCGCACCACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGGTGCTCGCCGTGCTGGAACAGCGCGGCCG
GATCAGCGCGCTGGGCAAGCGGGACATCTACACGGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCCGCCGCCGACCTGG
CCATCGCCCTCGCGCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATAGGCGAGGTCGGGCTC
GCGGGCGAGGTGAGACGAGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGTCTGGGCTTCACACATGCCCTGGT
CCCGGCCGATCCGGGGAAGATCCCACCGGGCATGAAGGTGCTGGAAGTGGCGGACATGGGGGACGCGCTGCGGGTCCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCGCAGGAGCGGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409