Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   WMY90_RS08045 Genome accession   NZ_CP150875
Coordinates   1552738..1553031 (+) Length   97 a.a.
NCBI ID   WP_011226625.1    Uniprot ID   Q5M2G2
Organism   Streptococcus thermophilus strain TCI125     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547738..1558031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS08020 (WMY90_08020) - 1549689..1550051 (+) 363 WP_011226630.1 DUF1033 family protein -
  WMY90_RS08025 (WMY90_08025) comGA/cglA/cilD 1550132..1551073 (+) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  WMY90_RS08030 (WMY90_08030) comGB 1550955..1552055 (+) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  WMY90_RS08035 (WMY90_08035) comGC 1552052..1552378 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  WMY90_RS08040 (WMY90_08040) comGD 1552338..1552766 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  WMY90_RS08045 (WMY90_08045) comGE 1552738..1553031 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  WMY90_RS08050 (WMY90_08050) comGF 1553015..1553452 (+) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  WMY90_RS08055 (WMY90_08055) comGG 1553430..1553747 (+) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  WMY90_RS08060 (WMY90_08060) comGH 1553792..1554748 (+) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  WMY90_RS08065 (WMY90_08065) - 1554804..1555997 (+) 1194 WP_022096898.1 acetate kinase -
  WMY90_RS08070 (WMY90_08070) - 1556246..1556443 (+) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  WMY90_RS08075 (WMY90_08075) - 1556686..1557111 (+) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  WMY90_RS08080 (WMY90_08080) - 1557185..1557628 (+) 444 WP_002946118.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.74 Da        Isoelectric Point: 10.4561

>NTDB_id=880901 WMY90_RS08045 WP_011226625.1 1552738..1553031(+) (comGE) [Streptococcus thermophilus strain TCI125]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=880901 WMY90_RS08045 WP_011226625.1 1552738..1553031(+) (comGE) [Streptococcus thermophilus strain TCI125]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361