Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RKV28_RS11370 Genome accession   NZ_CP134534
Coordinates   2253716..2254111 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5618     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2248716..2259111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS11345 thiE 2249315..2249956 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  RKV28_RS11350 thiM 2249958..2250749 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  RKV28_RS11355 thiD 2250733..2251563 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RKV28_RS11360 tenA 2251556..2252245 (-) 690 WP_044425301.1 thiaminase II -
  RKV28_RS11365 sceD 2252632..2253327 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  RKV28_RS11370 ssb 2253716..2254111 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RKV28_RS11375 - 2254305..2254745 (+) 441 WP_000846746.1 YwpF-like family protein -
  RKV28_RS11380 fabZ 2254804..2255244 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RKV28_RS11385 murA 2255278..2256543 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RKV28_RS11390 - 2256654..2256887 (-) 234 WP_000384523.1 DUF1146 family protein -
  RKV28_RS11395 - 2257019..2257111 (-) 93 WP_001790611.1 hypothetical protein -
  RKV28_RS11400 - 2257449..2257853 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=880805 RKV28_RS11370 WP_000932694.1 2253716..2254111(-) (ssb) [Staphylococcus aureus strain KNIH_5618]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880805 RKV28_RS11370 WP_000932694.1 2253716..2254111(-) (ssb) [Staphylococcus aureus strain KNIH_5618]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992