Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RKV28_RS02815 Genome accession   NZ_CP134534
Coordinates   594892..595461 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain KNIH_5618     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 589892..600461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS02790 cysE 591105..591752 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RKV28_RS02795 cysS 591736..593136 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  RKV28_RS02800 - 593129..593533 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RKV28_RS02805 rlmB 593541..594287 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKV28_RS02810 - 594287..594811 (+) 525 WP_000664737.1 NYN domain-containing protein -
  RKV28_RS02815 sigH 594892..595461 (+) 570 WP_000872882.1 sigma-70 family RNA polymerase sigma factor Regulator
  RKV28_RS02820 rpmG 595576..595719 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RKV28_RS02825 secE 595775..595957 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RKV28_RS02830 nusG 595970..596518 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RKV28_RS02835 rplK 596699..597121 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RKV28_RS02840 rplA 597329..598021 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RKV28_RS02845 rplJ 598293..598793 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RKV28_RS02850 rplL 598836..599204 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RKV28_RS02855 - 599379..599987 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=880773 RKV28_RS02815 WP_000872882.1 594892..595461(+) (sigH) [Staphylococcus aureus strain KNIH_5618]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=880773 RKV28_RS02815 WP_000872882.1 594892..595461(+) (sigH) [Staphylococcus aureus strain KNIH_5618]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979