Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RKV27_RS11000 Genome accession   NZ_CP134533
Coordinates   2202407..2202976 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197407..2207976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS10960 - 2197881..2198489 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  RKV27_RS10965 rplL 2198664..2199032 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RKV27_RS10970 rplJ 2199075..2199575 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  RKV27_RS10975 rplA 2199847..2200539 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  RKV27_RS10980 rplK 2200747..2201169 (-) 423 WP_001085791.1 50S ribosomal protein L11 -
  RKV27_RS10985 nusG 2201350..2201898 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RKV27_RS10990 secE 2201911..2202093 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RKV27_RS10995 rpmG 2202149..2202292 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  RKV27_RS11000 sigH 2202407..2202976 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  RKV27_RS11005 - 2203057..2203581 (-) 525 WP_000664738.1 NYN domain-containing protein -
  RKV27_RS11010 rlmB 2203581..2204327 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKV27_RS11015 - 2204335..2204739 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RKV27_RS11020 cysS 2204732..2206132 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  RKV27_RS11025 cysE 2206116..2206763 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=880758 RKV27_RS11000 WP_000872873.1 2202407..2202976(-) (sigH) [Staphylococcus aureus strain KNIH_5844]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=880758 RKV27_RS11000 WP_000872873.1 2202407..2202976(-) (sigH) [Staphylococcus aureus strain KNIH_5844]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984