Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RKV27_RS09105 Genome accession   NZ_CP134533
Coordinates   1810697..1811683 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805697..1816683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS09080 - 1805957..1806304 (-) 348 WP_001242102.1 hypothetical protein -
  RKV27_RS09085 - 1806490..1807083 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  RKV27_RS09090 - 1807187..1807552 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RKV27_RS09095 yjbH 1807575..1808381 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RKV27_RS09100 pepF 1808841..1810649 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RKV27_RS09105 coiA 1810697..1811683 (-) 987 WP_000959289.1 competence protein CoiA Machinery gene
  RKV27_RS09110 mecA 1811804..1812523 (-) 720 WP_001217728.1 adaptor protein MecA -
  RKV27_RS09115 spxA 1812894..1813289 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RKV27_RS09120 trpS 1813584..1814573 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RKV27_RS09125 opp4C 1814615..1815496 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  RKV27_RS09130 opp4B 1815508..1816470 (-) 963 WP_020978105.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=880753 RKV27_RS09105 WP_000959289.1 1810697..1811683(-) (coiA) [Staphylococcus aureus strain KNIH_5844]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=880753 RKV27_RS09105 WP_000959289.1 1810697..1811683(-) (coiA) [Staphylococcus aureus strain KNIH_5844]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979