Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RKV27_RS03225 Genome accession   NZ_CP134533
Coordinates   644782..645177 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_5844     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 639782..650177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV27_RS03195 - 641043..641447 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RKV27_RS03200 - 641783..641875 (+) 93 WP_031824610.1 hypothetical protein -
  RKV27_RS03205 - 642007..642240 (+) 234 WP_000384523.1 DUF1146 family protein -
  RKV27_RS03210 murA 642351..643616 (+) 1266 WP_311163184.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RKV27_RS03215 fabZ 643650..644090 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RKV27_RS03220 - 644148..644588 (-) 441 WP_000846746.1 YwpF-like family protein -
  RKV27_RS03225 ssb 644782..645177 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RKV27_RS03230 sceD 645566..646261 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  RKV27_RS03235 tenA 646648..647337 (+) 690 WP_000396064.1 thiaminase II -
  RKV27_RS03240 thiD 647330..648160 (+) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RKV27_RS03245 thiM 648144..648935 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  RKV27_RS03250 thiE 648937..649578 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=880726 RKV27_RS03225 WP_000932694.1 644782..645177(+) (ssb) [Staphylococcus aureus strain KNIH_5844]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880726 RKV27_RS03225 WP_000932694.1 644782..645177(+) (ssb) [Staphylococcus aureus strain KNIH_5844]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992