Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RKV26_RS11040 Genome accession   NZ_CP134532
Coordinates   2197060..2197455 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_6268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2192060..2202455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS11015 thiE 2192659..2193300 (-) 642 WP_154283798.1 thiamine phosphate synthase -
  RKV26_RS11020 thiM 2193302..2194093 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  RKV26_RS11025 thiD 2194077..2194907 (-) 831 WP_209205796.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RKV26_RS11030 tenA 2194900..2195589 (-) 690 WP_154283796.1 thiaminase II -
  RKV26_RS11035 sceD 2195976..2196671 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  RKV26_RS11040 ssb 2197060..2197455 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RKV26_RS11045 - 2197649..2198089 (+) 441 WP_000846750.1 YwpF-like family protein -
  RKV26_RS11050 fabZ 2198147..2198587 (-) 441 WP_154283794.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RKV26_RS11055 murA 2198621..2199886 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RKV26_RS11060 - 2199997..2200230 (-) 234 WP_000384523.1 DUF1146 family protein -
  RKV26_RS11065 - 2200362..2200454 (-) 93 WP_031789435.1 hypothetical protein -
  RKV26_RS11070 - 2200846..2201250 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=880717 RKV26_RS11040 WP_000932694.1 2197060..2197455(-) (ssb) [Staphylococcus aureus strain KNIH_6268]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880717 RKV26_RS11040 WP_000932694.1 2197060..2197455(-) (ssb) [Staphylococcus aureus strain KNIH_6268]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992