Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OCX51_RS04580 Genome accession   NZ_AP024742
Coordinates   959040..960026 (+) Length   328 a.a.
NCBI ID   WP_261925614.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59736     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954040..965026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX51_RS04555 opp4B 954253..955215 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OCX51_RS04560 opp4C 955227..956108 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  OCX51_RS04565 trpS 956150..957139 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  OCX51_RS04570 spxA 957434..957829 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OCX51_RS04575 mecA 958200..958919 (+) 720 WP_001217728.1 adaptor protein MecA -
  OCX51_RS04580 coiA 959040..960026 (+) 987 WP_261925614.1 competence protein CoiA Machinery gene
  OCX51_RS04585 pepF 960074..961882 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OCX51_RS04590 yjbH 962342..963148 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OCX51_RS04595 - 963171..963536 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OCX51_RS04600 - 963640..964233 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  OCX51_RS04605 - 964419..964766 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38870.49 Da        Isoelectric Point: 9.7732

>NTDB_id=88071 OCX51_RS04580 WP_261925614.1 959040..960026(+) (coiA) [Staphylococcus aureus strain 59736]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDADYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=88071 OCX51_RS04580 WP_261925614.1 959040..960026(+) (coiA) [Staphylococcus aureus strain 59736]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGCTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.695

100

0.997
  coiA Staphylococcus aureus N315

97.256

100

0.973

Multiple sequence alignment