Detailed information NTG0088072

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ53_RS13900
• Genome accession: NZ_AP027622
• Coordinates: 2782141..2783166 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSJ-12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2777141..2788166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ53_RS13880 (VEE42_26340)	metJ	2778202..2778519 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ53_RS13885 (VEE42_26350)	yiiX	2778703..2779311 (+)	609	WP_040073284.1	YiiX family permuted papain-like enzyme	-
AABJ53_RS13890 (VEE42_26360)	rpmE	2779372..2779584 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ53_RS13895 (VEE42_26370)	priA	2779787..2781985 (+)	2199	WP_186173557.1	primosomal protein N'	Machinery gene
AABJ53_RS13900 (VEE42_26380)	cytR	2782141..2783166 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ53_RS13905 (VEE42_26390)	ftsN	2783258..2784217 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ53_RS13910 (VEE42_26400)	hslV	2784310..2784840 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ53_RS13915 (VEE42_26410)	hslU	2784850..2786181 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ53_RS13920 (VEE42_26420)	menA	2786248..2787174 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ53_RS13925 (VEE42_26430)	rraA	2787267..2787752 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ53_RS13930 (VEE42_26440)	zapB	2787837..2788082 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=88072 AABJ53_RS13900 WP_000644904.1 2782141..2783166(+) (cytR) [Escherichia coli strain PSJ-12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=88072 AABJ53_RS13900 WP_000644904.1 2782141..2783166(+) (cytR) [Escherichia coli strain PSJ-12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628