Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RKV26_RS08050 Genome accession   NZ_CP134532
Coordinates   1640554..1641528 (-) Length   324 a.a.
NCBI ID   WP_000697215.1    Uniprot ID   A0AAE8P9U4
Organism   Staphylococcus aureus strain KNIH_6268     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635554..1646528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS08010 gcvT 1636055..1637146 (-) 1092 WP_267815012.1 glycine cleavage system aminomethyltransferase GcvT -
  RKV26_RS08015 - 1637305..1637829 (-) 525 WP_001015122.1 shikimate kinase -
  RKV26_RS08020 - 1637819..1637965 (-) 147 WP_001789879.1 hypothetical protein -
  RKV26_RS08025 comGF 1638062..1638559 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  RKV26_RS08030 comGE 1638477..1638776 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RKV26_RS08035 comGD 1638763..1639167 (-) 405 WP_209205909.1 competence type IV pilus minor pilin ComGD Machinery gene
  RKV26_RS08040 comGC 1639187..1639498 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RKV26_RS08045 comGB 1639512..1640582 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  RKV26_RS08050 comGA 1640554..1641528 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  RKV26_RS08055 - 1641580..1642203 (-) 624 WP_267815017.1 MBL fold metallo-hydrolase -
  RKV26_RS08060 - 1642200..1642529 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RKV26_RS08065 - 1642529..1643515 (-) 987 WP_000161315.1 ROK family glucokinase -
  RKV26_RS08070 - 1643512..1643715 (-) 204 WP_000087561.1 YqgQ family protein -
  RKV26_RS08075 - 1643696..1645159 (-) 1464 WP_158172984.1 rhomboid family intramembrane serine protease -
  RKV26_RS08080 - 1645171..1645710 (-) 540 WP_000164551.1 5-formyltetrahydrofolate cyclo-ligase -
  RKV26_RS08085 rpmG 1645919..1646068 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36853.90 Da        Isoelectric Point: 8.8516

>NTDB_id=880704 RKV26_RS08050 WP_000697215.1 1640554..1641528(-) (comGA) [Staphylococcus aureus strain KNIH_6268]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNGIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGVSVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=880704 RKV26_RS08050 WP_000697215.1 1640554..1641528(-) (comGA) [Staphylococcus aureus strain KNIH_6268]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATGGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATTTATTTTTTGAGAATATCAACATTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAACAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTTCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCCGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGTGTTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994