Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RKV26_RS02775 Genome accession   NZ_CP134532
Coordinates   555833..556402 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KNIH_6268     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 550833..561402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS02750 cysE 552046..552693 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RKV26_RS02755 cysS 552677..554077 (+) 1401 WP_154284090.1 cysteine--tRNA ligase -
  RKV26_RS02760 - 554070..554474 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RKV26_RS02765 rlmB 554482..555228 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKV26_RS02770 - 555228..555752 (+) 525 WP_000664740.1 NYN domain-containing protein -
  RKV26_RS02775 sigH 555833..556402 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  RKV26_RS02780 rpmG 556517..556660 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RKV26_RS02785 secE 556716..556898 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RKV26_RS02790 nusG 556911..557459 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RKV26_RS02795 rplK 557640..558062 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RKV26_RS02800 rplA 558270..558962 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RKV26_RS02805 rplJ 559234..559734 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RKV26_RS02810 rplL 559777..560145 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RKV26_RS02815 - 560320..560928 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=880687 RKV26_RS02775 WP_000872876.1 555833..556402(+) (sigH) [Staphylococcus aureus strain KNIH_6268]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=880687 RKV26_RS02775 WP_000872876.1 555833..556402(+) (sigH) [Staphylococcus aureus strain KNIH_6268]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984