Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OCX51_RS02625 Genome accession   NZ_AP024742
Coordinates   561745..562314 (+) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain 59736     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556745..567314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX51_RS02600 cysE 557958..558605 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OCX51_RS02605 cysS 558589..559989 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OCX51_RS02610 - 559982..560386 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OCX51_RS02615 rlmB 560394..561140 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCX51_RS02620 - 561140..561664 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OCX51_RS02625 sigH 561745..562314 (+) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  OCX51_RS02630 rpmG 562429..562572 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OCX51_RS02635 secE 562628..562810 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OCX51_RS02640 nusG 562823..563371 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OCX51_RS02645 rplK 563552..563974 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OCX51_RS02650 rplA 564182..564874 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OCX51_RS02655 rplJ 565146..565646 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OCX51_RS02660 rplL 565689..566057 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OCX51_RS02665 - 566232..566840 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=88066 OCX51_RS02625 WP_000872877.1 561745..562314(+) (sigH) [Staphylococcus aureus strain 59736]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=88066 OCX51_RS02625 WP_000872877.1 561745..562314(+) (sigH) [Staphylococcus aureus strain 59736]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment