Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX20_RS11070 Genome accession   NZ_AP024738
Coordinates   2214099..2214494 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59731     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2209099..2219494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS11045 thiE 2209561..2210202 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX20_RS11050 thiM 2210195..2210995 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX20_RS11055 thiD 2210979..2211809 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX20_RS11060 tenA 2211802..2212491 (-) 690 WP_000396077.1 thiaminase II -
  OCX20_RS11065 sceD 2213015..2213710 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX20_RS11070 ssb 2214099..2214494 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX20_RS11075 - 2214688..2215128 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX20_RS11080 fabZ 2215186..2215626 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX20_RS11085 murA 2215660..2216925 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX20_RS11090 - 2217036..2217269 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX20_RS11095 - 2217401..2217493 (-) 93 WP_031864518.1 hypothetical protein -
  OCX20_RS11100 - 2217831..2218235 (-) 405 WP_261921282.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=88054 OCX20_RS11070 WP_000932692.1 2214099..2214494(-) (ssb) [Staphylococcus aureus strain 59731]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=88054 OCX20_RS11070 WP_000932692.1 2214099..2214494(-) (ssb) [Staphylococcus aureus strain 59731]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment