Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RHP70_RS05265 Genome accession   NZ_CP134496
Coordinates   1084896..1085474 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus sp. SG20001     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079896..1090474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS05245 (RHP70_05245) - 1080391..1081698 (-) 1308 Protein_975 globin-coupled sensor protein -
  RHP70_RS05250 (RHP70_05250) - 1081778..1083310 (-) 1533 WP_025093356.1 FAD-dependent oxidoreductase -
  RHP70_RS05255 (RHP70_05255) - 1083453..1084313 (+) 861 WP_197202935.1 SDR family oxidoreductase -
  RHP70_RS05260 (RHP70_05260) - 1084370..1084606 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  RHP70_RS05265 (RHP70_05265) comK 1084896..1085474 (+) 579 WP_024425481.1 competence protein ComK Regulator
  RHP70_RS05270 (RHP70_05270) - 1085774..1086256 (+) 483 WP_024425482.1 hypothetical protein -
  RHP70_RS05275 (RHP70_05275) - 1086288..1086440 (-) 153 Protein_981 PLP-dependent aminotransferase family protein -
  RHP70_RS05280 (RHP70_05280) - 1086549..1086827 (+) 279 WP_171464240.1 barstar family protein -
  RHP70_RS05285 (RHP70_05285) ceuB 1086989..1087939 (+) 951 WP_056766093.1 ABC transporter permease Machinery gene
  RHP70_RS05290 (RHP70_05290) - 1087932..1088882 (+) 951 WP_171464128.1 iron chelate uptake ABC transporter family permease subunit -
  RHP70_RS05295 (RHP70_05295) - 1088873..1089631 (+) 759 WP_024425488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=880472 RHP70_RS05265 WP_024425481.1 1084896..1085474(+) (comK) [Bacillus sp. SG20001]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=880472 RHP70_RS05265 WP_024425481.1 1084896..1085474(+) (comK) [Bacillus sp. SG20001]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCAGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62