Detailed information NTG0880428

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: KDR_RS09935
• Genome accession: NZ_CP150840
• Coordinates: 1995822..1997033 (+)
• Length: 403 a.a.
• NCBI ID: WP_010888606.1
• Uniprot ID: Q9RSZ6
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1990822..2002033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KDR_RS09905	-	1991120..1991914 (+)	795	WP_010888600.1	enoyl-ACP reductase	-
KDR_RS09910	-	1992123..1992761 (-)	639	WP_027479823.1	nitroreductase family protein	-
KDR_RS09915	-	1992842..1993201 (+)	360	WP_010888602.1	helix-turn-helix domain-containing protein	-
KDR_RS09920	-	1993272..1993757 (-)	486	WP_010888603.1	GreA/GreB family elongation factor	-
KDR_RS09925	-	1993953..1995137 (+)	1185	WP_051618904.1	sugar MFS transporter	-
KDR_RS09930	clpP	1995211..1995825 (+)	615	WP_010888605.1	ATP-dependent Clp protease proteolytic subunit	Regulator
KDR_RS09935	clpX	1995822..1997033 (+)	1212	WP_010888606.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
KDR_RS09940	lon	1997180..1999621 (+)	2442	WP_027479826.1	endopeptidase La	-
KDR_RS09945	-	1999674..2000558 (-)	885	WP_010888608.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 44283.48 Da
• Isoelectric Point: 4.7712

>NTDB_id=880428 KDR_RS09935 WP_010888606.1 1995822..1997033(+) (clpX) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MTRATADRCSFCGRQHPQIAQLIEAPGRAAFICNECAERAFDLVKQQRKEAGSEFSLDELPSAKEIKAYLDEFVIGQDEA
KKALAVAVVSHYHRLSNPDAGLQKSNILLIGPTGTGKTLLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQA
AEYDVAAAERGIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQVDTRNILFIVG
GAFESMSEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLVKFGLIPEFVGRLPLVVQLQDLDEDALIRILTEPQGAIIK
QYQALFGFQGVDLTFSEEALQEVAHRAKERKTGARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYIDDPLKALESKGLK
KSA

Nucleotide

• Length: 1212 bp

>NTDB_id=880428 KDR_RS09935 WP_010888606.1 1995822..1997033(+) (clpX) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGACCCGCGCCACCGCCGACCGCTGCTCGTTTTGCGGACGCCAGCACCCGCAGATCGCCCAGCTCATCGAAGCGCCGGG
CCGCGCCGCCTTTATCTGCAACGAGTGCGCCGAGCGCGCCTTTGACCTCGTCAAGCAGCAGCGCAAGGAAGCGGGCAGCG
AGTTCAGCCTCGACGAACTGCCGAGCGCCAAGGAAATCAAGGCGTACCTCGACGAGTTCGTGATTGGACAGGACGAAGCG
AAGAAAGCGCTCGCCGTCGCCGTGGTCAGCCACTACCACCGCCTCTCGAACCCTGACGCCGGACTGCAAAAGAGCAACAT
CCTCTTGATCGGGCCGACCGGCACCGGCAAGACGCTGCTCGCCCAGAGCCTCGCGGAAATGCTCGAAGTGCCCTTCGCCA
TCGCCGACGCCACCACGCTGACCGAAGCCGGGTATGTGGGCGACGACGTGGAGAACGTGATTGTCCGCCTGCTGCAAGCC
GCCGAGTACGACGTGGCCGCCGCCGAGCGCGGAATCATCTACGTGGACGAAATCGACAAGATCGCCCGCAAGTCCGAAGG
CACCTCGATCACCCGCGACGTGAGCGGCGAAGGCGTGCAGCAAGCGCTCCTCAAGATCATCGAAGGGACCGTGGCGCAAG
TTCCCCCGCAGGGGGGTCGCAAGCACCCACAGCAGGAACTCGTGCAGGTGGACACCCGCAACATCCTGTTCATCGTGGGC
GGCGCCTTCGAGAGCATGAGCGAAATCGCCCGCGCCCGCACCAACGTCCGCGCCGTGGGCTTCGGCGCCGAGCACAAGGG
CGAGGAAAAGGAAGAAGTGCGCTTCCTTCCCGAAGACCTCGTGAAGTTCGGGTTGATTCCCGAGTTCGTGGGCCGTCTGC
CGCTCGTGGTGCAGCTCCAAGACCTCGACGAGGACGCCCTGATCCGCATCCTGACCGAACCGCAGGGCGCCATCATCAAG
CAGTACCAAGCGCTGTTCGGCTTTCAGGGTGTGGACCTGACCTTCAGCGAAGAAGCGCTGCAAGAAGTCGCCCACCGCGC
CAAGGAGCGCAAGACCGGGGCGCGTGGCCTGCGCGCCGTCCTCGAAAAATCGATGACCGATCTGCTGTTCGAACTACCCC
GCGACGACGTGAAGGAAATTCGTTTCGAGGCGGAGTATATTGACGACCCACTGAAGGCACTTGAGTCTAAGGGACTCAAA
AAGTCTGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (302-373)

• ClpX C4-type zinc finger (zf-C4_ClpX) (8-46)

• AAA domain (Cdc48 subfamily) (AAA_2) (103-295)

3D structure

• AlphaFold DB: Q9RSZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.623	96.03	0.553
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.367	99.504	0.531