Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX20_RS08310 Genome accession   NZ_AP024738
Coordinates   1700235..1700921 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59731     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695235..1705921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS08290 rpsT 1696149..1696400 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX20_RS08295 holA 1696445..1697419 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX20_RS08300 comEC 1697476..1699677 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX20_RS08305 - 1699682..1700143 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX20_RS08310 comEA 1700235..1700921 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX20_RS08315 - 1700961..1701677 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OCX20_RS08320 rsfS 1701680..1702033 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX20_RS08325 yqeK 1702034..1702618 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX20_RS08330 nadD 1702608..1703177 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX20_RS08335 yhbY 1703180..1703470 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX20_RS08340 aroE 1703474..1704280 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX20_RS08345 yqeH 1704294..1705394 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=88042 OCX20_RS08310 WP_001793467.1 1700235..1700921(-) (comEA) [Staphylococcus aureus strain 59731]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=88042 OCX20_RS08310 WP_001793467.1 1700235..1700921(-) (comEA) [Staphylococcus aureus strain 59731]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment