Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   RJW51_RS08905 Genome accession   NZ_CP134491
Coordinates   1753892..1754581 (+) Length   229 a.a.
NCBI ID   WP_024396425.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748892..1759581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS08880 (RJW51_08865) - 1749207..1750565 (+) 1359 WP_172089467.1 DEAD/DEAH box helicase -
  RJW51_RS08885 (RJW51_08870) - 1750584..1750808 (+) 225 WP_024396428.1 DUF4059 family protein -
  RJW51_RS08890 (RJW51_08875) trxB 1750821..1751738 (+) 918 WP_172089466.1 thioredoxin-disulfide reductase -
  RJW51_RS08895 (RJW51_08880) - 1751748..1752287 (+) 540 WP_172089465.1 YceD family protein -
  RJW51_RS08900 (RJW51_08885) gndA 1752383..1753810 (+) 1428 WP_024391132.1 NADP-dependent phosphogluconate dehydrogenase -
  RJW51_RS08905 (RJW51_08890) covR 1753892..1754581 (+) 690 WP_024396425.1 winged helix-turn-helix domain-containing protein Regulator
  RJW51_RS08910 (RJW51_08895) - 1754661..1755791 (+) 1131 WP_172089464.1 AI-2E family transporter -
  RJW51_RS08915 (RJW51_08900) - 1755888..1757012 (+) 1125 WP_172041286.1 ISAs1 family transposase -
  RJW51_RS08920 (RJW51_08905) nrdR 1757185..1757676 (+) 492 WP_024391135.1 transcriptional regulator NrdR -
  RJW51_RS08925 (RJW51_08910) - 1757663..1758814 (+) 1152 WP_024396423.1 replication initiation/membrane attachment protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26275.13 Da        Isoelectric Point: 5.0455

>NTDB_id=880393 RJW51_RS08905 WP_024396425.1 1753892..1754581(+) (covR) [Streptococcus parasuis strain 1628469]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGEEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVMIVV
VEPTEVAEHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHASYRDLKVDFQNRTVTRGDELINLTR
REYDLLVTLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGVGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=880393 RJW51_RS08905 WP_024396425.1 1753892..1754581(+) (covR) [Streptococcus parasuis strain 1628469]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTATCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCCTCAACTGGAGAAGAAGCTTTATCGCTAGCTCATGAGACGGACTTCGATTTGGTATTGATGAGTT
TCCAATTATCCGATATGTCCAGTAAAGAACTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGAACATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAACCTTTTGTTAT
TAGTGACTTGGTGGAACAAATTTCTGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAGGTTCATTTGC
ATGCGTCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGTGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTGTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.66

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.038

100

0.445