Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RJW51_RS02530 Genome accession   NZ_CP134491
Coordinates   503274..505076 (-) Length   600 a.a.
NCBI ID   WP_172090132.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 498274..510076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS02505 (RJW51_02495) - 499641..500129 (-) 489 WP_105126200.1 LURP-one-related/scramblase family protein -
  RJW51_RS02510 (RJW51_02500) prsA 500397..501413 (-) 1017 WP_024391865.1 peptidylprolyl isomerase PrsA -
  RJW51_RS02515 (RJW51_02505) - 501476..502195 (-) 720 WP_172090129.1 class I SAM-dependent methyltransferase -
  RJW51_RS02520 (RJW51_02510) - 502265..502816 (-) 552 WP_172090130.1 DUF6630 family protein -
  RJW51_RS02525 (RJW51_02515) - 502829..503272 (-) 444 WP_172090131.1 hypothetical protein -
  RJW51_RS02530 (RJW51_02520) pepF 503274..505076 (-) 1803 WP_172090132.1 oligoendopeptidase F Regulator
  RJW51_RS02535 (RJW51_02525) coiA 505149..506087 (-) 939 WP_172090133.1 competence protein CoiA family protein Machinery gene
  RJW51_RS02540 (RJW51_02530) metG 506148..508151 (-) 2004 WP_172090134.1 methionine--tRNA ligase -
  RJW51_RS02545 (RJW51_02535) - 508307..508900 (+) 594 WP_172090135.1 DUF1361 domain-containing protein -
  RJW51_RS02550 (RJW51_02540) - 508944..509114 (-) 171 WP_397610493.1 hypothetical protein -
  RJW51_RS02555 (RJW51_02545) - 509149..509469 (-) 321 WP_397610494.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69159.34 Da        Isoelectric Point: 4.5061

>NTDB_id=880356 RJW51_RS02530 WP_172090132.1 503274..505076(-) (pepF) [Streptococcus parasuis strain 1628469]
MSKQRQEIEEKYQWDLTTIFPTDEAWEEELASLQAETEATKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=880356 RJW51_RS02530 WP_172090132.1 503274..505076(-) (pepF) [Streptococcus parasuis strain 1628469]
ATGTCTAAACAACGTCAAGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACAGAAGCGACAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAAACACAACTCGGTCTCATGCGTCGTATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACGCGTGAGGGCAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAGGAGCAGTTGAAAGCATTCATGGATGAAGAGCCAACCTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCACGTTTTGTCACAAGAAATTGAAGAAGTATTGGCAGCTACG
AGTGAGATTTTCGAATCTCCAGCAGAAACCTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTATATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCCATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTTTGCAGTCTAACGTTAAGGTCAAT
AATCTAAAAGCACGTTTGCGGAAGTACGATTCAGCTCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATTTTTGGTGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAACATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCACTTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGTCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTTGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTAAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCAAAAGCAGGTGTAGATATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7