Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RJW51_RS00535 Genome accession   NZ_CP134491
Coordinates   107437..108663 (+) Length   408 a.a.
NCBI ID   WP_024404609.1    Uniprot ID   A0A6L8MUB6
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 102437..113663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS00510 (RJW51_00505) - 103442..103777 (+) 336 WP_172089336.1 hypothetical protein -
  RJW51_RS00515 (RJW51_00510) - 103939..104898 (+) 960 WP_172089335.1 ROK family glucokinase -
  RJW51_RS00520 (RJW51_00515) - 105313..105615 (+) 303 WP_172089333.1 hypothetical protein -
  RJW51_RS00525 (RJW51_00520) - 105668..106507 (+) 840 WP_024396521.1 thymidylate synthase -
  RJW51_RS00530 (RJW51_00525) - 106727..107239 (+) 513 WP_024404608.1 dihydrofolate reductase -
  RJW51_RS00535 (RJW51_00530) clpX 107437..108663 (+) 1227 WP_024404609.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RJW51_RS00540 (RJW51_00535) yihA 108724..109311 (+) 588 WP_024392204.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RJW51_RS00545 (RJW51_00540) ndk 109333..109746 (+) 414 WP_172054779.1 nucleoside-diphosphate kinase -
  RJW51_RS00550 (RJW51_00545) lepA 109844..111676 (+) 1833 WP_172040377.1 translation elongation factor 4 -
  RJW51_RS00555 (RJW51_00550) - 111766..111969 (+) 204 Protein_110 transposase -
  RJW51_RS00560 (RJW51_00555) - 111965..112587 (+) 623 Protein_111 helicase SNF2 -
  RJW51_RS00565 (RJW51_00560) - 112640..113509 (-) 870 WP_024392200.1 DMT family transporter -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45506.05 Da        Isoelectric Point: 4.6050

>NTDB_id=880350 RJW51_RS00535 WP_024404609.1 107437..108663(+) (clpX) [Streptococcus parasuis strain 1628469]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=880350 RJW51_RS00535 WP_024404609.1 107437..108663(+) (clpX) [Streptococcus parasuis strain 1628469]
ATGGCTGTTAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCG
AAACGTGCATTGGCTGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGTGATGAAAATGATGTTGA
TTTGCAAAAATCCAATATCTTGATGATTGGTCCAACTGGATCCGGTAAAACATTCTTAGCACAAACCCTAGCAAAGAGTT
TGAATGTACCTTTCGCAATTGCTGATGCAACTGCGCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAGAATATTTTA
CTAAAATTATTGCAGGCAGCAGATTTTAACATTGACCGCGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTTCCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCACGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTGTTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTTGCAGCCTTAGATCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTTGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MUB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.619

100

0.838
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.529

0.566