Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJW53_RS07765 Genome accession   NZ_CP134488
Coordinates   1520811..1521614 (-) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis strain NLS50     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515811..1526614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS07745 (RJW53_07745) - 1516168..1517214 (-) 1047 WP_023369700.1 D-alanine--D-alanine ligase -
  RJW53_RS07750 (RJW53_07750) recR 1517319..1517915 (-) 597 WP_002935848.1 recombination mediator RecR -
  RJW53_RS07755 (RJW53_07755) pbp2b 1517924..1519999 (-) 2076 WP_024405652.1 penicillin-binding protein PBP2B -
  RJW53_RS07760 (RJW53_07760) - 1520091..1520465 (-) 375 WP_023369696.1 ATP-binding cassette domain-containing protein -
  RJW53_RS07765 (RJW53_07765) vicX 1520811..1521614 (-) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  RJW53_RS07770 (RJW53_07770) micB 1521621..1522970 (-) 1350 WP_074392660.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW53_RS07775 (RJW53_07775) micA 1522963..1523667 (-) 705 WP_002935840.1 response regulator YycF Regulator
  RJW53_RS07780 (RJW53_07780) - 1523888..1525609 (+) 1722 WP_074389404.1 IS1634 family transposase -
  RJW53_RS07785 (RJW53_07785) - 1525850..1526611 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=880328 RJW53_RS07765 WP_023369694.1 1520811..1521614(-) (vicX) [Streptococcus suis strain NLS50]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=880328 RJW53_RS07765 WP_023369694.1 1520811..1521614(-) (vicX) [Streptococcus suis strain NLS50]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764