Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RJW49_RS10345 Genome accession   NZ_CP134477
Coordinates   2052453..2053217 (+) Length   254 a.a.
NCBI ID   WP_014736607.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047453..2058217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS10330 (RJW49_10330) - 2049835..2050518 (-) 684 WP_012775416.1 YoaK family protein -
  RJW49_RS10335 (RJW49_10335) rlmH 2050543..2051022 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RJW49_RS10340 (RJW49_10340) htrA 2051196..2052392 (+) 1197 WP_014736606.1 S1C family serine protease Regulator
  RJW49_RS10345 (RJW49_10345) spo0J 2052453..2053217 (+) 765 WP_014736607.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28956.22 Da        Isoelectric Point: 9.4760

>NTDB_id=880238 RJW49_RS10345 WP_014736607.1 2052453..2053217(+) (spo0J) [Streptococcus suis strain NLS40]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNSIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=880238 RJW49_RS10345 WP_014736607.1 2052453..2053217(+) (spo0J) [Streptococcus suis strain NLS40]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATTCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.762

99.213

0.543