Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJW49_RS07110 Genome accession   NZ_CP134477
Coordinates   1385190..1385993 (-) Length   267 a.a.
NCBI ID   WP_012027300.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380190..1390993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS07090 (RJW49_07090) recR 1380617..1381213 (-) 597 WP_012027296.1 recombination mediator RecR -
  RJW49_RS07095 (RJW49_07095) pbp2b 1381222..1383297 (-) 2076 WP_024393197.1 penicillin-binding protein PBP2B -
  RJW49_RS07100 (RJW49_07100) abc-f 1383374..1384675 (-) 1302 WP_074393324.1 ribosomal protection-like ABC-F family protein -
  RJW49_RS07105 (RJW49_07105) - 1384662..1384934 (-) 273 WP_014735627.1 hypothetical protein -
  RJW49_RS07110 (RJW49_07110) vicX 1385190..1385993 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator
  RJW49_RS07115 (RJW49_07115) micB 1386000..1387349 (-) 1350 WP_012027301.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJW49_RS07120 (RJW49_07120) micA 1387342..1388046 (-) 705 WP_004298854.1 response regulator YycF Regulator
  RJW49_RS07125 (RJW49_07125) - 1388240..1389001 (+) 762 WP_012027304.1 amino acid ABC transporter ATP-binding protein -
  RJW49_RS07130 (RJW49_07130) - 1389012..1389851 (+) 840 WP_012027305.1 transporter substrate-binding domain-containing protein -
  RJW49_RS07135 (RJW49_07135) - 1389866..1390564 (+) 699 WP_012028333.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29643.75 Da        Isoelectric Point: 5.7755

>NTDB_id=880220 RJW49_RS07110 WP_012027300.1 1385190..1385993(-) (vicX) [Streptococcus suis strain NLS40]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=880220 RJW49_RS07110 WP_012027300.1 1385190..1385993(-) (vicX) [Streptococcus suis strain NLS40]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCGCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768